Index

A

Action (class in lems.model.dynamics) actions (lems.model.dynamics.EventHandler attribute) add() (lems.model.component.Component method) (lems.model.component.Fat method) (lems.model.component.FatComponent method) (lems.model.dynamics.Behavioral method) (lems.model.dynamics.ConditionalDerivedVariable method) (lems.model.dynamics.Dynamics method) (lems.model.dynamics.EventHandler method) (lems.model.model.Model method) (lems.model.simulation.Simulation method) (lems.model.structure.MultiInstantiate method) (lems.model.structure.Structure method) add_action() (lems.model.dynamics.EventHandler method) add_assign() (lems.model.structure.MultiInstantiate method) add_attachment() (lems.sim.runnable.Runnable method) add_attachments() (lems.model.component.Fat method) add_case() (lems.model.dynamics.ConditionalDerivedVariable method) add_child() (lems.model.component.Component method) (lems.sim.runnable.Runnable method) add_child_component() (lems.model.component.FatComponent method) add_child_instance() (lems.model.structure.Structure method) add_child_to_group() (lems.sim.runnable.Runnable method) add_child_typeref() (lems.sim.runnable.Runnable method) add_children() (lems.model.component.Fat method) add_component() (lems.model.model.Model method) add_component_reference() (lems.model.component.Fat method) add_component_requirement() (lems.model.component.Fat method) add_component_type() (lems.model.model.Model method) add_conditional_derived_variable() (lems.model.dynamics.Behavioral method) add_constant() (lems.model.component.Fat method) (lems.model.model.Model method) add_data_display() (lems.model.simulation.Simulation method) add_data_writer() (lems.model.simulation.Simulation method) add_derived_parameter() (lems.model.component.Fat method) add_derived_variable() (lems.model.dynamics.Behavioral method) (lems.sim.runnable.Reflective method) add_dimension() (lems.model.model.Model method) add_dynamics_1() (lems.sim.build.SimulationBuilder method) add_dynamics_2() (lems.sim.build.SimulationBuilder method) add_event_connection() (lems.model.structure.ForEach method) (lems.model.structure.Structure method) add_event_handler() (lems.model.dynamics.Behavioral method) add_event_in_port() (lems.sim.runnable.Runnable method)

add_event_out_port() (lems.sim.runnable.Runnable method) add_event_port() (lems.model.component.Fat method) add_event_record() (lems.model.simulation.Simulation method) add_event_writer() (lems.model.simulation.Simulation method) add_exposure() (lems.model.component.Fat method) add_fat_component() (lems.model.model.Model method) add_for_each() (lems.model.structure.ForEach method) (lems.model.structure.Structure method) add_include() (lems.model.model.Model method) add_include_directory() (lems.model.model.Model method) add_index_parameter() (lems.model.component.Fat method) add_instance_requirement() (lems.model.component.Fat method) add_instance_variable() (lems.sim.runnable.Reflective method) add_kinetic_scheme() (lems.model.dynamics.Behavioral method) add_link() (lems.model.component.Fat method) add_method() (lems.sim.runnable.Reflective method) add_multi_instantiate() (lems.model.structure.Structure method) add_parameter() (lems.model.component.Fat method) add_path() (lems.model.component.Fat method) add_property() (lems.model.component.Fat method) add_record() (lems.model.simulation.Simulation method) add_recording_behavior() (lems.sim.build.SimulationBuilder method) add_regime() (lems.model.dynamics.Dynamics method) (lems.sim.runnable.Runnable method) add_requirement() (lems.model.component.Fat method) add_run() (lems.model.simulation.Simulation method) add_runnable() (lems.sim.sim.Simulation method) add_state_variable() (lems.model.dynamics.Behavioral method) add_target() (lems.model.model.Model method) add_text() (lems.model.component.Fat method) add_text_variable() (lems.sim.runnable.Reflective method) add_time_derivative() (lems.model.dynamics.Behavioral method) add_tunnel() (lems.model.structure.Structure method) add_unit() (lems.model.model.Model method) add_value() (lems.sim.recording.Recording method) add_variable_recorder() (lems.sim.runnable.Runnable method) add_variable_recorder2() (lems.sim.runnable.Runnable method) add_with() (lems.model.structure.Structure method) any_svs_plotted() (in module lems.dlems.exportdlems) as_ (lems.model.structure.With attribute) Assign (class in lems.model.structure) assignments (lems.model.structure.MultiInstantiate attribute) Attachments (class in lems.model.component) attachments (lems.model.component.Fat attribute)

B

Behavioral (class in lems.model.dynamics) build() (lems.sim.build.SimulationBuilder method) build_action() (lems.sim.build.SimulationBuilder method) build_conditional_derived_var_code() (lems.sim.build.SimulationBuilder method) build_event_connections() (lems.sim.build.SimulationBuilder method) build_event_handler() (lems.sim.build.SimulationBuilder method) build_event_out() (lems.sim.build.SimulationBuilder method) build_expression_from_tree() (lems.sim.build.SimulationBuilder method) build_foreach() (lems.sim.build.SimulationBuilder method)

build_on_condition() (lems.sim.build.SimulationBuilder method) build_on_entry() (lems.sim.build.SimulationBuilder method) build_on_event() (lems.sim.build.SimulationBuilder method) build_on_start() (lems.sim.build.SimulationBuilder method) build_reduce_code() (lems.sim.build.SimulationBuilder method) build_runnable() (lems.sim.build.SimulationBuilder method) build_state_assignment() (lems.sim.build.SimulationBuilder method) build_structure() (lems.sim.build.SimulationBuilder method) build_transition() (lems.sim.build.SimulationBuilder method)

C

Case (class in lems.model.dynamics) cases (lems.model.dynamics.ConditionalDerivedVariable attribute) child_components (lems.model.component.FatComponent attribute) child_instances (lems.model.structure.Structure attribute) ChildInstance (class in lems.model.structure) Children (class in lems.model.component) children (lems.model.component.Component attribute) (lems.model.component.Fat attribute) clean_up() (lems.parser.expr.ValueNode method) cleanup_stacks() (lems.parser.expr.ExprParser method) clear() (lems.model.dynamics.Behavioral method) color (lems.model.simulation.Record attribute) comp2sign() (in module lems.dlems.exportdlems) comp_ref_map (lems.model.model.Model attribute) Component (class in lems.model.component) component (lems.model.simulation.Run attribute) (lems.model.structure.ChildInstance attribute) (lems.model.structure.MultiInstantiate attribute) component_a (lems.model.structure.Tunnel attribute) component_b (lems.model.structure.Tunnel attribute)

component_references (lems.model.component.Fat attribute) component_requirements (lems.model.component.Fat attribute) component_type (lems.model.structure.MultiInstantiate attribute) component_types (lems.model.model.Model attribute) ComponentReference (class in lems.model.component) ComponentRequirement (class in lems.model.component) components (lems.model.model.Model attribute) ComponentType (class in lems.model.component) condition (lems.model.dynamics.Case attribute) condition_expression_tree (lems.model.dynamics.Case attribute) conditional_derived_variables (lems.model.dynamics.Behavioral attribute) ConditionalDerivedVariable (class in lems.model.dynamics) configure_time() (lems.sim.runnable.Runnable method) Constant (class in lems.model.component) constants (lems.model.component.Fat attribute) (lems.model.model.Model attribute) construct_path() (lems.model.model.Model method) convert_func() (lems.sim.build.SimulationBuilder method) convert_op() (lems.sim.build.SimulationBuilder method) copy() (lems.base.base.LEMSBase method) (lems.sim.runnable.Runnable method)

D

data_displays (lems.model.simulation.Simulation attribute) data_region (lems.model.simulation.DataDisplay attribute) data_writers (lems.model.simulation.Simulation attribute) DataDisplay (class in lems.model.simulation) DataOutput (class in lems.model.simulation) DataWriter (class in lems.model.simulation) debug (lems.model.model.Model attribute) (lems.parser.expr.ExprParser attribute) (lems.sim.build.SimulationBuilder attribute) (lems.sim.runnable.Reflective attribute) (lems.sim.sim.Simulation attribute) default_value (lems.model.component.Property attribute) depth (lems.parser.expr.ExprParser attribute) derived_parameters (lems.model.component.Fat attribute) derived_variables (lems.model.dynamics.Behavioral attribute) DerivedParameter (class in lems.model.component) DerivedVariable (class in lems.model.dynamics) description (lems.model.component.Attachments attribute) (lems.model.component.Children attribute) (lems.model.component.ComponentRequirement attribute) (lems.model.component.ComponentType attribute) (lems.model.component.Constant attribute) (lems.model.component.DerivedParameter attribute) (lems.model.component.EventPort attribute) (lems.model.component.Exposure attribute) (lems.model.component.IndexParameter attribute) (lems.model.component.InstanceRequirement attribute) (lems.model.component.Link attribute) (lems.model.component.Parameter attribute) (lems.model.component.Path attribute) (lems.model.component.Property attribute) (lems.model.component.Requirement attribute) (lems.model.component.Text attribute) (lems.model.fundamental.Dimension attribute) (lems.model.fundamental.Unit attribute) (lems.model.model.Model attribute)

Dimension (class in lems.model.fundamental) dimension (lems.model.component.Constant attribute) (lems.model.component.DerivedParameter attribute) (lems.model.component.Exposure attribute) (lems.model.component.Parameter attribute) (lems.model.component.Property attribute) (lems.model.component.Requirement attribute) (lems.model.dynamics.ConditionalDerivedVariable attribute) (lems.model.dynamics.DerivedVariable attribute) (lems.model.dynamics.StateVariable attribute) (lems.model.fundamental.Unit attribute) dimensions (lems.model.model.Model attribute) direction (lems.model.component.EventPort attribute) disable_plasticity() (lems.sim.sim.Simulation method) Display (class in lems.run) do_startup() (lems.sim.runnable.Runnable method) dump() (lems.sim.sim.Simulation method) dump_runnable() (lems.sim.sim.Simulation method) Dynamics (class in lems.model.dynamics) dynamics (lems.model.component.Fat attribute)

E

edge_source (lems.model.dynamics.KineticScheme attribute) edge_target (lems.model.dynamics.KineticScheme attribute) edges (lems.model.dynamics.KineticScheme attribute) enable_plasticity() (lems.sim.sim.Simulation method) end_a (lems.model.structure.Tunnel attribute) end_b (lems.model.structure.Tunnel attribute) Event (class in lems.sim.sim) event_connections (lems.model.structure.ForEach attribute) (lems.model.structure.Structure attribute) event_handlers (lems.model.dynamics.Behavioral attribute) event_ports (lems.model.component.Fat attribute) event_queue (lems.sim.sim.Simulation attribute) event_records (lems.model.simulation.Simulation attribute) event_writers (lems.model.simulation.Simulation attribute) EventConnection (class in lems.model.structure) EventHandler (class in lems.model.dynamics) EventOut (class in lems.model.dynamics)

EventPort (class in lems.model.component) eventPort (lems.model.simulation.EventRecord attribute) EventRecord (class in lems.model.simulation) EventWriter (class in lems.model.simulation) export_component() (in module lems.dlems.exportdlems) export_to_dom() (lems.model.model.Model method) export_to_file() (lems.model.model.Model method) Exposure (class in lems.model.component) exposure (lems.model.dynamics.ConditionalDerivedVariable attribute) (lems.model.dynamics.DerivedVariable attribute) (lems.model.dynamics.StateVariable attribute) exposures (lems.model.component.Fat attribute) expression_tree (lems.model.dynamics.DerivedVariable attribute) (lems.model.dynamics.StateAssignment attribute) (lems.model.dynamics.TimeDerivative attribute) ExprNode (class in lems.parser.expr) ExprParser (class in lems.parser.expr) extends (lems.model.component.ComponentType attribute)

F

fail_on_missing_includes (lems.model.model.Model attribute) Fat (class in lems.model.component) fat_components (lems.model.model.Model attribute) FatComponent (class in lems.model.component) fatten_component() (lems.model.model.Model method) file (lems.model.fundamental.Include attribute) file_name (lems.model.simulation.DataWriter attribute) (lems.model.simulation.EventWriter attribute) Fixed (class in lems.model.component) fixed (lems.model.component.Parameter attribute)

fixed_value (lems.model.component.Parameter attribute) for_eachs (lems.model.structure.ForEach attribute) (lems.model.structure.Structure attribute) ForEach (class in lems.model.structure) format (lems.model.simulation.EventWriter attribute) forward_rate (lems.model.dynamics.KineticScheme attribute) from_ (lems.model.structure.EventConnection attribute) from_id (lems.sim.sim.Event attribute) func (lems.parser.expr.Func1Node attribute) FUNC1 (lems.parser.expr.ExprNode attribute) Func1Node (class in lems.parser.expr)

G

get_comp_ref_map() (lems.model.model.Model method) get_component_list() (lems.model.model.Model method) get_fattened_component_list() (lems.model.model.Model method) get_full_comp_paths_with_comp_refs() (lems.model.model.Model method)

get_nested_components() (lems.model.model.Model method) get_nons_tag_from_node() (in module lems.parser.LEMS) get_numeric_value() (lems.model.model.Model method) get_parent_component() (lems.model.model.Model method)

H

has_content() (lems.model.dynamics.Behavioral method) (lems.model.dynamics.Dynamics method) (lems.model.structure.Structure method)

has_display() (in module lems.dlems.exportdlems)

I

i (lems.model.fundamental.Dimension attribute) id (lems.model.component.Component attribute) (lems.model.component.FatComponent attribute) (lems.model.simulation.EventRecord attribute) (lems.model.simulation.Record attribute) id_counter (lems.parser.LEMS.LEMSFileParser attribute) import_from_file() (lems.model.model.Model method) inc_event_in() (lems.sim.runnable.Runnable method) Include (class in lems.model.fundamental) include_directories (lems.model.model.Model attribute) include_dirs (lems.parser.LEMS.LEMSFileParser attribute) include_file() (lems.model.model.Model method) include_includes (lems.model.model.Model attribute) (lems.parser.LEMS.LEMSFileParser attribute) included_files (lems.model.model.Model attribute) includes (lems.model.model.Model attribute)

increment (lems.model.simulation.Run attribute) index (lems.model.structure.With attribute) index_parameters (lems.model.component.Fat attribute) IndexParameter (class in lems.model.component) inequality_to_condition() (in module lems.dlems.exportdlems) init_parser() (lems.parser.LEMS.LEMSFileParser method) init_run() (lems.sim.sim.Simulation method) initial (lems.model.dynamics.Regime attribute) instance (lems.model.structure.With attribute) instance_requirements (lems.model.component.Fat attribute) InstanceRequirement (class in lems.model.component) is_empty() (lems.base.stack.Stack method) is_func() (lems.parser.expr.ExprParser method) is_op() (lems.parser.expr.ExprParser method) is_sym() (lems.parser.expr.ExprParser method) is_var_in_exp_tree() (in module lems.sim.build)

J

j (lems.model.fundamental.Dimension attribute)

K

k (lems.model.fundamental.Dimension attribute)

kinetic_schemes (lems.model.dynamics.Behavioral attribute) KineticScheme (class in lems.model.dynamics)

L

l (lems.model.fundamental.Dimension attribute) left (lems.parser.expr.OpNode attribute) lems module lems.api module lems.base module lems.base.base module lems.base.errors module lems.base.map module lems.base.stack module lems.base.util module lems.dlems module lems.dlems.exportdlems module lems.model module lems.model.component module lems.model.dynamics module lems.model.fundamental module lems.model.model module

lems.model.simulation module lems.model.structure module lems.parser module lems.parser.expr module lems.parser.LEMS module lems.run module lems.sim module lems.sim.build module lems.sim.recording module lems.sim.runnable module lems.sim.sim module LEMSBase (class in lems.base.base) LEMSError LEMSFileParser (class in lems.parser.LEMS) LEMSXMLNode (class in lems.parser.LEMS) Link (class in lems.model.component) links (lems.model.component.Fat attribute) list (lems.model.structure.With attribute) list_exposures() (lems.model.model.Model method) list_recording_paths_for_exposures() (lems.model.model.Model method) local (lems.model.component.ComponentReference attribute)

M

m (lems.model.fundamental.Dimension attribute) main() (in module lems.run) make_attachment() (lems.sim.runnable.Runnable method) make_id() (in module lems.base.util) make_op_node() (lems.parser.expr.ExprParser method) Map (class in lems.base.map) merge_component_types() (lems.model.model.Model method) merge_lists() (in module lems.base.util) merge_maps() (in module lems.base.util) message (lems.base.errors.LEMSError attribute) Model (class in lems.model.model) model (lems.parser.LEMS.LEMSFileParser attribute) (lems.sim.build.SimulationBuilder attribute) ModelError module lems lems.api lems.base lems.base.base lems.base.errors lems.base.map lems.base.stack lems.base.util lems.dlems lems.dlems.exportdlems lems.model lems.model.component lems.model.dynamics lems.model.fundamental lems.model.model lems.model.simulation lems.model.structure lems.parser lems.parser.expr lems.parser.LEMS lems.run lems.sim lems.sim.build lems.sim.recording lems.sim.runnable lems.sim.sim

multi_instantiates (lems.model.structure.Structure attribute) MultiInstantiate (class in lems.model.structure) multiple (lems.model.component.Children attribute)

N

n (lems.model.fundamental.Dimension attribute) name (lems.model.component.Attachments attribute) (lems.model.component.Children attribute) (lems.model.component.ComponentReference attribute) (lems.model.component.ComponentRequirement attribute) (lems.model.component.ComponentType attribute) (lems.model.component.Constant attribute) (lems.model.component.DerivedParameter attribute) (lems.model.component.EventPort attribute) (lems.model.component.Exposure attribute) (lems.model.component.IndexParameter attribute) (lems.model.component.InstanceRequirement attribute) (lems.model.component.Link attribute) (lems.model.component.Parameter attribute) (lems.model.component.Path attribute) (lems.model.component.Property attribute) (lems.model.component.Requirement attribute) (lems.model.component.Text attribute) (lems.model.dynamics.ConditionalDerivedVariable attribute) (lems.model.dynamics.DerivedVariable attribute) (lems.model.dynamics.KineticScheme attribute) (lems.model.dynamics.Regime attribute) (lems.model.dynamics.StateVariable attribute) (lems.model.fundamental.Dimension attribute) (lems.model.fundamental.Unit attribute) (lems.model.structure.Tunnel attribute)

nodes (lems.model.dynamics.KineticScheme attribute) number (lems.model.structure.MultiInstantiate attribute) numeric_value (lems.model.component.Constant attribute) (lems.model.component.Parameter attribute)

O

offset (lems.model.fundamental.Unit attribute) OnCondition (class in lems.model.dynamics) OnEntry (class in lems.model.dynamics) OnEvent (class in lems.model.dynamics) OnStart (class in lems.model.dynamics)

OP (lems.parser.expr.ExprNode attribute) op (lems.parser.expr.OpNode attribute) op_priority (lems.parser.expr.ExprParser attribute) OpNode (class in lems.parser.expr) order_derived_parameters() (in module lems.sim.build) order_derived_variables() (in module lems.sim.build)

P

param (lems.parser.expr.Func1Node attribute) Parameter (class in lems.model.component) parameters (lems.model.component.Component attribute) (lems.model.component.Fat attribute) parent_behavioral (lems.model.dynamics.Behavioral attribute) (lems.model.dynamics.Regime attribute) parent_id (lems.model.component.Component attribute) (lems.model.component.FatComponent attribute) parse() (lems.parser.expr.ExprParser method) (lems.parser.LEMS.LEMSFileParser method) parse2() (lems.parser.expr.ExprParser method) parse_assertion() (lems.parser.LEMS.LEMSFileParser method) parse_attachments() (lems.parser.LEMS.LEMSFileParser method) parse_case() (lems.parser.LEMS.LEMSFileParser method) parse_child() (lems.parser.LEMS.LEMSFileParser method) parse_child_instance() (lems.parser.LEMS.LEMSFileParser method) parse_children() (lems.parser.LEMS.LEMSFileParser method) parse_component() (lems.parser.LEMS.LEMSFileParser method) parse_component_by_typename() (lems.parser.LEMS.LEMSFileParser method) parse_component_reference() (lems.parser.LEMS.LEMSFileParser method) parse_component_requirement() (lems.parser.LEMS.LEMSFileParser method) parse_component_type() (lems.parser.LEMS.LEMSFileParser method) parse_conditional_derived_variable() (lems.parser.LEMS.LEMSFileParser method) parse_constant() (lems.parser.LEMS.LEMSFileParser method) parse_data_display() (lems.parser.LEMS.LEMSFileParser method) parse_data_writer() (lems.parser.LEMS.LEMSFileParser method) parse_derived_parameter() (lems.parser.LEMS.LEMSFileParser method) parse_derived_variable() (lems.parser.LEMS.LEMSFileParser method) parse_dimension() (lems.parser.LEMS.LEMSFileParser method) parse_dynamics() (lems.parser.LEMS.LEMSFileParser method) parse_event_connection() (lems.parser.LEMS.LEMSFileParser method) parse_event_out() (lems.parser.LEMS.LEMSFileParser method) parse_event_port() (lems.parser.LEMS.LEMSFileParser method) parse_event_record() (lems.parser.LEMS.LEMSFileParser method) parse_event_writer() (lems.parser.LEMS.LEMSFileParser method) parse_exposure() (lems.parser.LEMS.LEMSFileParser method) parse_fixed() (lems.parser.LEMS.LEMSFileParser method) parse_for_each() (lems.parser.LEMS.LEMSFileParser method) parse_include() (lems.parser.LEMS.LEMSFileParser method) parse_index_parameter() (lems.parser.LEMS.LEMSFileParser method) parse_instance_requirement() (lems.parser.LEMS.LEMSFileParser method) parse_kinetic_scheme() (lems.parser.LEMS.LEMSFileParser method) parse_link() (lems.parser.LEMS.LEMSFileParser method) parse_multi_instantiate() (lems.parser.LEMS.LEMSFileParser method) parse_on_condition() (lems.parser.LEMS.LEMSFileParser method) parse_on_entry() (lems.parser.LEMS.LEMSFileParser method)

parse_on_event() (lems.parser.LEMS.LEMSFileParser method) parse_on_start() (lems.parser.LEMS.LEMSFileParser method) parse_parameter() (lems.parser.LEMS.LEMSFileParser method) parse_path() (lems.parser.LEMS.LEMSFileParser method) parse_property() (lems.parser.LEMS.LEMSFileParser method) parse_record() (lems.parser.LEMS.LEMSFileParser method) parse_regime() (lems.parser.LEMS.LEMSFileParser method) parse_requirement() (lems.parser.LEMS.LEMSFileParser method) parse_run() (lems.parser.LEMS.LEMSFileParser method) parse_show() (lems.parser.LEMS.LEMSFileParser method) parse_simulation() (lems.parser.LEMS.LEMSFileParser method) parse_state_assignment() (lems.parser.LEMS.LEMSFileParser method) parse_state_variable() (lems.parser.LEMS.LEMSFileParser method) parse_string (lems.parser.expr.ExprParser attribute) parse_structure() (lems.parser.LEMS.LEMSFileParser method) parse_target() (lems.parser.LEMS.LEMSFileParser method) parse_text() (lems.parser.LEMS.LEMSFileParser method) parse_time_derivative() (lems.parser.LEMS.LEMSFileParser method) parse_token_list_rec() (lems.parser.expr.ExprParser method) parse_transition() (lems.parser.LEMS.LEMSFileParser method) parse_tunnel() (lems.parser.LEMS.LEMSFileParser method) parse_unit() (lems.parser.LEMS.LEMSFileParser method) parse_with() (lems.parser.LEMS.LEMSFileParser method) ParseError Path (class in lems.model.component) path (lems.model.simulation.DataWriter attribute) (lems.model.simulation.EventWriter attribute) paths (lems.model.component.Fat attribute) plot_recording() (in module lems.run) pop() (lems.base.stack.Stack method) pop_state() (lems.sim.runnable.Runnable method) (lems.sim.sim.Simulation method) port (lems.model.dynamics.EventOut attribute) (lems.model.dynamics.OnEvent attribute) power (lems.model.fundamental.Unit attribute) priority() (lems.parser.expr.ExprParser method) process_args() (in module lems.run) process_nested_tags() (lems.parser.LEMS.LEMSFileParser method) process_simulation_output() (in module lems.run) process_simulation_specs() (lems.sim.build.SimulationBuilder method) properties (lems.model.component.Fat attribute) Property (class in lems.model.component) property_ (lems.model.structure.Assign attribute) push() (lems.base.stack.Stack method) push_state() (lems.sim.runnable.Runnable method) (lems.sim.sim.Simulation method)

Q

quantity (lems.model.simulation.EventRecord attribute) (lems.model.simulation.Record attribute)

R

raise_error() (lems.parser.LEMS.LEMSFileParser method) receiver (lems.model.structure.EventConnection attribute) receiver_container (lems.model.structure.EventConnection attribute) Record (class in lems.model.simulation) record_variables() (lems.sim.runnable.Runnable method) Recording (class in lems.sim.recording) records (lems.model.simulation.Simulation attribute) reduce (lems.model.dynamics.DerivedVariable attribute) referenced_component (lems.model.component.ComponentReference attribute) (lems.model.structure.ChildInstance attribute) Reflective (class in lems.sim.runnable) Regime (class in lems.model.dynamics) (class in lems.sim.runnable) regime (lems.model.dynamics.Transition attribute) regimes (lems.model.dynamics.Dynamics attribute) register_event_out_callback() (lems.sim.runnable.Runnable method) register_event_out_link() (lems.sim.runnable.Runnable method) required (lems.model.dynamics.DerivedVariable attribute)

Requirement (class in lems.model.component) requirements (lems.model.component.Fat attribute) reset_time() (lems.sim.runnable.Runnable method) resolve() (lems.model.model.Model method) resolve_component_type() (lems.model.model.Model method) resolve_path() (lems.sim.runnable.Runnable method) resolve_simulation() (lems.model.model.Model method) resolve_structure() (lems.model.model.Model method) resolved_model (lems.model.model.Model attribute) reverse_rate (lems.model.dynamics.KineticScheme attribute) right (lems.parser.expr.OpNode attribute) Run (class in lems.model.simulation) run() (in module lems.run) (lems.sim.sim.Simulation method) run_queue (lems.sim.sim.Simulation attribute) Runnable (class in lems.sim.runnable) runnables (lems.sim.sim.Simulation attribute) runs (lems.model.simulation.Simulation attribute)

S

scale (lems.model.fundamental.Unit attribute) (lems.model.simulation.Record attribute) schema_location (lems.model.model.Model attribute) select (lems.model.dynamics.DerivedVariable attribute) set_parameter() (lems.model.component.Component method) set_parent_id() (lems.model.component.Component method) (lems.model.component.FatComponent method) sim (lems.sim.build.SimulationBuilder attribute) SimBuildError SimError Simulation (class in lems.model.simulation) (class in lems.sim.sim) simulation (lems.model.component.Fat attribute) SimulationBuilder (class in lems.sim.build)

single_step() (lems.sim.runnable.Runnable method) single_step2() (lems.sim.runnable.Runnable method) source_port (lems.model.structure.EventConnection attribute) Stack (class in lems.base.stack) stack (lems.base.stack.Stack attribute) StackError state_variable (lems.model.dynamics.KineticScheme attribute) state_variables (lems.model.dynamics.Behavioral attribute) StateAssignment (class in lems.model.dynamics) StateVariable (class in lems.model.dynamics) step() (lems.sim.sim.Simulation method) Structure (class in lems.model.structure) structure (lems.model.component.Fat attribute) symbol (lems.model.component.Constant attribute) (lems.model.fundamental.Unit attribute)

T

t (lems.model.fundamental.Dimension attribute) tag_parse_table (lems.parser.LEMS.LEMSFileParser attribute) target_lems_version (lems.model.model.Model attribute) target_port (lems.model.structure.EventConnection attribute) targets (lems.model.model.Model attribute) test (lems.model.dynamics.OnCondition attribute) Text (class in lems.model.component) texts (lems.model.component.Fat attribute) time_derivatives (lems.model.dynamics.Behavioral attribute) time_scale (lems.model.simulation.DataDisplay attribute) TimeDerivative (class in lems.model.dynamics) title (lems.model.simulation.DataDisplay attribute) to (lems.model.structure.EventConnection attribute) to_id (lems.sim.sim.Event attribute) to_python_expr() (lems.parser.expr.Func1Node method) (lems.parser.expr.OpNode method) (lems.parser.expr.ValueNode method) to_si() (in module lems.dlems.exportdlems) token_list (lems.parser.expr.ExprParser attribute) tokenize() (lems.parser.expr.ExprParser method) top() (lems.base.stack.Stack method) total (lems.model.simulation.Run attribute) toxml() (lems.base.base.LEMSBase method) (lems.model.component.Attachments method) (lems.model.component.Children method) (lems.model.component.Component method) (lems.model.component.ComponentReference method) (lems.model.component.ComponentRequirement method) (lems.model.component.ComponentType method) (lems.model.component.Constant method) (lems.model.component.DerivedParameter method) (lems.model.component.EventPort method) (lems.model.component.Exposure method) (lems.model.component.Fixed method) (lems.model.component.IndexParameter method) (lems.model.component.InstanceRequirement method) (lems.model.component.Link method) (lems.model.component.Parameter method) (lems.model.component.Path method) (lems.model.component.Property method) (lems.model.component.Requirement method) (lems.model.component.Text method) (lems.model.dynamics.Behavioral method) (lems.model.dynamics.Case method) (lems.model.dynamics.ConditionalDerivedVariable method) (lems.model.dynamics.DerivedVariable method) (lems.model.dynamics.EventOut method) (lems.model.dynamics.KineticScheme method) (lems.model.dynamics.OnCondition method) (lems.model.dynamics.OnEntry method) (lems.model.dynamics.OnEvent method) (lems.model.dynamics.OnStart method) (lems.model.dynamics.StateAssignment method) (lems.model.dynamics.StateVariable method) (lems.model.dynamics.TimeDerivative method) (lems.model.dynamics.Transition method) (lems.model.fundamental.Dimension method) (lems.model.fundamental.Include method) (lems.model.fundamental.Unit method) (lems.model.simulation.DataDisplay method) (lems.model.simulation.DataWriter method) (lems.model.simulation.EventRecord method) (lems.model.simulation.EventWriter method) (lems.model.simulation.Record method) (lems.model.simulation.Run method) (lems.model.simulation.Simulation method) (lems.model.structure.Assign method) (lems.model.structure.ChildInstance method) (lems.model.structure.EventConnection method) (lems.model.structure.ForEach method) (lems.model.structure.MultiInstantiate method) (lems.model.structure.Structure method) (lems.model.structure.Tunnel method) (lems.model.structure.With method)

Transition (class in lems.model.dynamics) Tunnel (class in lems.model.structure) tunnels (lems.model.structure.Structure attribute) type (lems.model.component.Attachments attribute) (lems.model.component.Children attribute) (lems.model.component.Component attribute) (lems.model.component.ComponentReference attribute) (lems.model.component.FatComponent attribute) (lems.model.component.InstanceRequirement attribute) (lems.model.component.Link attribute) (lems.parser.expr.ExprNode attribute) types (lems.model.component.Fat attribute)

U

uid_count (lems.sim.runnable.Runnable attribute) Unit (class in lems.model.fundamental)

units (lems.model.model.Model attribute) update_shadow_variables() (lems.sim.runnable.Runnable method)

V

valid_children (lems.parser.LEMS.LEMSFileParser attribute) validate_lems() (in module lems.base.util) value (lems.model.component.Constant attribute) (lems.model.component.DerivedParameter attribute) (lems.model.component.Link attribute) (lems.model.component.Parameter attribute) (lems.model.component.Path attribute) (lems.model.component.Text attribute) (lems.model.dynamics.Case attribute) (lems.model.dynamics.DerivedVariable attribute) (lems.model.dynamics.StateAssignment attribute) (lems.model.dynamics.TimeDerivative attribute) (lems.model.structure.Assign attribute)

VALUE (lems.parser.expr.ExprNode attribute) value (lems.parser.expr.ValueNode attribute) value_expression_tree (lems.model.dynamics.Case attribute) ValueNode (class in lems.parser.expr) variable (lems.model.dynamics.StateAssignment attribute) (lems.model.dynamics.TimeDerivative attribute) (lems.model.simulation.Run attribute)

W

With (class in lems.model.structure)

withs (lems.model.structure.Structure attribute)